Computer Science Department

Selected research products

Castagno P , Pernice S , Ghetti G , Povero M , Pradelli L , Paolotti D , Balbo G , Sereno M , Beccuti M (2020)
A computational framework for modeling and studying pertussis epidemiology and vaccination.
https://iris.unito.it/handle/2318/1759507

Simone Pernice, Laura Follia, Gianfranco Balbo, Luciano Milanesi, Giulia Sartini, Niccolò Totis, Pietro Liò, Ivan Merelli, Francesca Cordero, Marco Beccuti (2020)
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice.
https://iris.unito.it/handle/2318/1716827

CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system
2023-01-01 Pernice, Simone; Sirovich, Roberta; Grassi, Elena; Viviani, Marco; Ferri, Martina; Sassi, Francesco; Alessandrì, Luca; Tortarolo, Dora; Calogero, Raffaele A; Trusolino, Livio; Bertotti, Andrea; Beccuti, Marco; Olivero, Martina; Cordero, Francesca https://iris.unito.it/handle/2318/1914011

From compositional Petri Net modeling to macro and micro simulation by means of Stochastic Simulation and Agent-Based models
2023-01-01 Amparore, Elvio; Beccuti, Marco; Castagno, Paolo; Pernice, Simone; Franceschinis, Giuliana; Pennisi, Marzio https://iris.unito.it/handle/2318/1930490

How the Competition for Cysteine May Promote Infection of SARS-CoV-2 by Triggering Oxidative Stress
2023-01-01 Vernone A.; Bergandi L.; Pernice S.; Pescarmona G.; Silvagno F. https://iris.unito.it/handle/2318/1906732

Dissecting MRD Kinetics By Automated Computational Analysis to Improve Outcome Prediction in Mantle Cell Lymphoma: A Bioinformatic Substudy from the Fondazione Italiana Linfomi (FIL) MCL0208 Clinical Trial
2022-01-01 Francesca Cordero, Simone Ferrero, Simone Pernice, Elisa Genuardi, Roberta Sirovich, Beatrice Alessandria, Andrea Evangelista, Simone Ragaini, Maurizio Martelli, Alice Di Rocco, Alessandro Re, Chiara Pagani, Vittorio Stefoni, Federica Cavallo, Carola Boccomini, Monica Balzarotti, Vittorio Ruggero Zilioli, Maria Gomes da Silva, Luca Arcaini, Melania Celli, Gian Maria Zaccaria, Dora Tortarolo, Sergio Cortelazzo, Marco Ladetto https://iris.unito.it/handle/2318/1883020

An Agent-Based Model to Support Infection Control Strategies at School
2022-01-01 Baccega Daniele, Pernice Simone, Terna Pietro, Castagno Paolo, Moirano Giovenale, Richiardi Lorenzo, Sereno Matteo, Rabellino Sergio, Maule Milena, Beccuti Marco https://iris.unito.it/handle/2318/1875158

A Petri net formalism to study systems at different scales exploiting agent-based and stochastic simulations.
2021-01-01 Beccuti, M., Castagno, P., Franceschinis, G., Pennisi, M., Pernice, S. https://iris.unito.it/handle/2318/1851886

Multiple sclerosis disease: A computational approach for investigating its drug interactions
2020-01-01 Pernice S.; Beccuti M.; Romano G.; Pennisi M.; Maglione A.; Cutrupi S.; Pappalardo F.; Capra L.; Franceschinis G.; De Pierro M.; Balbo G.; Cordero F.; Calogero R. https://iris.unito.it/handle/2318/1765792

Computational modeling of the immune response in multiple sclerosis using epimod framework
2020-01-01 Pernice S.; Follia L.; Maglione A.; Pennisi M.; Pappalardo F.; Novelli F.; Clerico M.; Beccuti M.; Cordero F.; Rolla S. https://iris.unito.it/handle/2318/1795050

GPU accelerated analysis of treg-teff cross regulation in relapsing-remitting multiple sclerosis
2019-01-01 Beccuti M.; Cazzaniga P.; Pennisi M.; Besozzi D.; Nobile M.S.; Pernice S.; Russo G.; Tangherloni A.; Pappalardo F. https://iris.unito.it/handle/2318/1765789

Exploiting Stochastic Petri Net formalism to capture the Relapsing Remitting Multiple Sclerosis variability under Daclizumab administration
2019-01-01 Pernice S.; Romano G.; Russo G.; Beccuti M.; Pennisi M.; Pappalardo F. https://iris.unito.it/handle/2318/1765787

Pernice S , Castagno P , Marcotulli L , Maule M M , Richiardi L , Moirano G , Sereno M , Cordero F , Beccuti M (2020)
Impacts of reopening strategies for COVID-19 epidemic: a modeling study in Piedmont region.
https://iris.unito.it/handle/2318/1761315

Piaggeschi, Giulia, Licheri, Nicola, Romano, Greta, Pernice, Simone, Follia, Laura, Ferrero, Giulio (2019)
MethylFASTQ: A Tool Simulating Bisulfite Sequencing Data.
https://iris.unito.it/handle/2318/1695383

Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Laura Follia, Simone Pernice (2019)
A Tool for the Automatic Derivation of Symbolic ODE from Symmetric Net Models.
https://iris.unito.it/handle/2318/1725811

Pernice S , Pennisi M , Romano G , Maglione A , Cutrupi S , Pappalardo F , Balbo G , Beccuti M , Cordero F , Calogero R A (2019)
A computational approach based on the colored Petri net formalism for studying multiple sclerosis.
https://iris.unito.it/handle/2318/1737994

Laura Follia, Fabio Tordini, Simone Pernice, , , Greta Romano, Giulia Piaggeschi, Giulio Ferrero (2018)
ParallNormal: An Efficient Variant Calling Pipeline for Unmatched Sequencing Data.
https://iris.unito.it/handle/2318/1669999

Marco Beccuti, Lorenzo Capra, Massimiliano De Pierro, Giuliana Franceschinis, Simone Pernice (2018)
Deriving Symbolic Ordinary Differential Equations from Stochastic Symmetric Nets Without Unfolding.
https://iris.unito.it/handle/2318/1690344

Pernice S , Beccuti M , Do P , Pennisi M , Pappalardo F (2018)
Estimating Daclizumab effects in Multiple Sclerosis using Stochastic Symmetric Nets.
https://iris.unito.it/handle/2318/1710926

Courses

• Informatica (INT0399)
  Corso di laurea in matematica per la Finanza e l'Assicurazione

Research topics

His current research interests are in the area of mathematical modeling, application of stochastic models for systems biology, theory and application of Petri Nets (Generalized Stochastic Petri Nets, Stochastic Symmetric Nets, Extended Stochastic Symmetric Nets).

Research groups

• Quantitative Biology (q-Bio)

• Quantitative Biology (q-Bio)

Academic bodies

• Consiglio di Dipartimento